Output from the MATLAB Script Outcome1.m, Important Gene List, SVM direction, Died vs. Survived Rank Gene Name 1 phosphoserine phosphatase-like N75028 2 carbonic anhydrase II H23187 3 Homo sapiens mRNA; cDNA DKFZp564O2364 (from clone DKFZp564O2364) W90240 4 keratin 13 W23757 5 collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) AI679372 6 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 3 AA056733 7 chromosome 20 open reading frame 16 H93328 8 phosphatidylinositol-4-phosphate 5-kinase, type II, beta H80263 9 Homo sapiens, clone MGC:22588 IMAGE:4696566, mRNA, complete cds N74131 10 solute carrier family 16 (monocarboxylic acid transporters), member 4 R73003 11 GATA binding protein 3 R31441 12 crystallin, zeta (quinone reductase) R13434 13 abhydrolase domain containing 2 AA454207 14 Homo sapiens cDNA FLJ30904 fis, clone FEBRA2005824 N35592 15 v-myb myeloblastosis viral oncogene homolog (avian) N49284 16 3-hydroxybutyrate dehydrogenase (heart, mitochondrial) T67057 17 Homo sapiens cDNA FLJ11918 fis, clone HEMBB1000272 N39240 18 putative G protein-coupled receptor H50224 19 topoisomerase (DNA) II alpha (170kD) AA504348 20 fibromodulin AA485748 21 **mitochondrial ribosomal protein S14 T51290 22 phosphoserine phosphatase AA488432 23 coagulation factor XIII, A1 polypeptide AA448599 24 asporin (LRR class 1) T60482 25 cyclin-dependent kinase inhibitor 1A (p21, Cip1) N23941 26 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) AA042878 27 putative UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase T9 T51229 28 protein kinase C, mu N53380 29 ESTs AA151994 30 HSPC150 protein similar to ubiquitin-conjugating enzyme AA460431 31 COBW-like protein AA135451 32 islet cell autoantigen 1 (69kD) AA482169 33 major histocompatibility complex, class II, DR beta 3 H52245 34 keratin 13 W60057 35 KIAA0102 gene product AA487265 36 RAB6A, member RAS oncogene family N70212 37 angiotensin receptor 1 H66070 38 uncharacterized bone marrow protein BM046 N59846 39 insulin-like growth factor binding protein 2 (36kD) H78560 40 collagen, type XI, alpha 1 R31701 41 N74084 42 ESTs, Weakly similar to S71512 hypothetical protein T2 - mouse [M.musculus] AA133777 43 CD37 antigen AA676453 44 **ESTs, Highly similar to ZN83_HUMAN Zinc finger protein 83 (Zinc finger protein HPF1) [H.sapiens] AA166907 45 BTG family, member 2 H69582 46 chromobox homolog 1 (HP1 beta homolog Drosophila ) AA448667 47 S100 calcium binding protein A1 AA425934 48 endothelial and smooth muscle cell-derived neuropilin-like protein H99543 49 Duffy blood group T74141 50 cathepsin K (pycnodysostosis) R00859 51 PPAR binding protein T57034 52 ESTs, Weakly similar to T48187 hypothetical protein F7A7.180 - Arabidopsis thaliana [A.thaliana] H39221 53 protease, serine, 23 AA431796 54 Homo sapiens cDNA: FLJ23160 fis, clone LNG09682 N52554 55 hypothetical protein FLJ20605 T63490 56 HRAS-like suppressor 3 AA476438 57 Homo sapiens cDNA: FLJ22030 fis, clone HEP08669 H09164 58 regulator of nonsense transcripts 2 T56874 59 multiple endocrine neoplasia I AA400234 60 **myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) N77807 61 WD repeat domain 13 AA486356 62 pp21 homolog H96654 63 KIAA0397 gene product AA291833 64 Homo sapiens mRNA; cDNA DKFZp761M0111 (from clone DKFZp761M0111) N64505 65 lipin 1 AA446821 66 hypothetical gene ZD52F10 AA457707 67 transcription factor A, mitochondrial AA150777 68 Fc fragment of IgG binding protein R52030 69 integrin, beta 4 AA485668 70 skeletal muscle and kidney enriched inositol phosphatase AA449154 71 phosphoribosyl pyrophosphate synthetase-associated protein 1 R20005 72 signal recognition particle 72kD W32523 73 anti-oxidant protein 2 (non-selenium glutathione peroxidase, acidic calcium-independent phospholipase A2) AA598874 74 cytochrome c R63543 75 hypothetical protein MGC3133 R78514 76 solute carrier family 26 (sulfate transporter), member 2 N73101 77 **glucose phosphate isomerase H88540 78 chemokine (C-X3-C) receptor 1 N51278 79 SBBI31 protein AA007634 80 microtubule-associated protein 1 light chain 3 alpha AA115532 81 KIAA0354 gene product AA062802 82 membrane-spanning 4-domains, subfamily A, member 7 T62699 83 similar to rat tricarboxylate carrier-like protein AA293453 84 optineurin R70518 85 aquaporin 1 (channel-forming integral protein, 28kD) H23036 86 **proline rich 4 (lacrimal) R39258 87 collectin sub-family member 12 N53421 88 KIAA0429 gene product AA676805 89 choline phosphotransferase 1 R18933 90 cleavage and polyadenylation specific factor 2, 100kD subunit H52390 91 hypothetical protein FLJ13110 AA431233 92 Homo sapiens mRNA; cDNA DKFZp434E033 (from clone DKFZp434E033) N63001 93 hypothetical protein FLJ32499 W56526 94 **angiotensin receptor-like 1 N51944 95 fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome) AA443093 96 emopamil binding protein (sterol isomerase) N67038 97 zinc finger protein 42 (myeloid-specific retinoic acid- responsive) AA279940 98 Kruppel-like factor 3 (basic) R06749 99 ganglioside induced differentiation associated protein 2 AA127840 100 fragile X mental retardation, autosomal homolog 1 N73976 -100 olfactomedin 1 H23123 -99 S100 calcium binding protein A2 AA458884 -98 myosin light chain 2a N93941 -97 tetraspan 5 H23278 -96 serine protease inhibitor, Kunitz type, 2 AA031287 -95 hypothetical protein FLJ20481 N32611 -94 phosphodiesterase 7A H65033 -93 p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast) R15832 -92 zinc finger, DHHC domain containing 2 R09490 -91 gamma-aminobutyric acid (GABA) A receptor, epsilon H63532 -90 Homo sapiens, clone IMAGE:3536536, mRNA AA405571 -89 keratin 19 AA464250 -88 **serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 R00822 -87 cystatin A (stefin A) W72207 -86 similar to phospholipase C, delta H80748 -85 RNA helicase-related protein T56221 -84 keratin 7 AA485959 -83 amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III) AA668425 -82 Homo sapiens mRNA; cDNA DKFZp434B0425 (from clone DKFZp434B0425) AA010188 -81 **glioma pathogenesis-related protein AA251800 -80 tumor protein D52 AA459100 -79 H1 histone family, member 2 T66815 -78 bullous pemphigoid antigen 1 (230/240kD) H44784 -77 TEA domain family member 4 W72159 -76 chitinase 3-like 1 (cartilage glycoprotein-39) AA434048 -75 kinesin family member 3C AA446908 -74 nuclear matrix protein NXP-2 N73634 -73 lipocalin 2 (oncogene 24p3) AA400973 -72 ligase III, DNA, ATP-dependent AA149292 -71 amiloride binding protein 1 (amine oxidase (copper-containing)) T46923 -70 hemoglobin, beta AA027100 -69 adipose differentiation-related protein AA142916 -68 gamma-aminobutyric acid (GABA) B receptor, 1 N70841 -67 retinal short-chain dehydrogenase/reductase retSDR2 N79745 -66 hematological and neurological expressed 1 AA459865 -65 coagulation factor II (thrombin) receptor-like 1 AA454652 -64 RNA helicase-related protein N55459 -63 DKFZP586G1517 protein AA424504 -62 tissue factor pathway inhibitor 2 AA293402 -61 Homo sapiens, Similar to stromal cell derived factor 5, clone MGC:9395 IMAGE:3874262, mRNA, complete cds AA449300 -60 ESTs W58562 -59 high-mobility group (nonhistone chromosomal) protein 1 AA683085 -58 type I transmembrane receptor (seizure-related protein) AA426408 -57 syndecan 1 AA074511 -56 FK506 binding protein 5 W86653 -55 stearoyl-CoA desaturase (delta-9-desaturase) AA457700 -54 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast) AA430092 -53 phospholipase A2, group IIA (platelets, synovial fluid) T61271 -52 lipoprotein lipase AA633835 -51 signal transducer and activator of transcription 4 R91570 -50 Homo sapiens clone 24877 mRNA sequence T60389 -49 Homo sapiens OK/SW-cl.68 mRNA, complete cds AA282134 -48 ESTs, Moderately similar to hypothetical protein FLJ20489 [Homo sapiens] [H.sapiens] AA233892 -47 alanine-glyoxylate aminotransferase (oxalosis I; hyperoxaluria I; glycolicaciduria; serine-pyruvate aminotransferase) N57872 -46 cytochrome P450, subfamily IVB, polypeptide 1 AA291484 -45 claudin 4 AA506754 -44 gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) AA455800 -43 complement component 4B AA664406 -42 solute carrier family 4, anion exchanger, member 3 AA609880 -41 junctional adhesion molecule 1 R81173 -40 sorbitol dehydrogenase AA700604 -39 hypothetical protein FLJ21963 T74065 -38 serine threonine kinase 39 (STE20/SPS1 homolog, yeast) N80129 -37 transforming growth factor beta-stimulated protein TSC-22 AA664389 -36 hypothetical protein PRO1489 H98215 -35 dual specificity phosphatase 6 AA811335 -34 hemoglobin, alpha 2 N55566 -33 dual specificity phosphatase 6 AA630374 -32 R3H domain (binds single-stranded nucleic acids) containing AA504206 -31 N-myc downstream regulated gene 1 AA486403 -30 transferrin H69531 -29 stearoyl-CoA desaturase (delta-9-desaturase) R00706 -28 p8 protein (candidate of metastasis 1) T64469 -27 thymosin, beta, identified in neuroblastoma cells N91887 -26 W86859 -25 hypothetical protein PRO1489 AA131299 -24 laminin, gamma 2 (nicein (100kD), kalinin (105kD), BM600 (100kD), Herlitz junctional epidermolysis bullosa)) AA677534 -23 aquaporin 3 R91904 -22 **amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 R93162 -21 cadherin 1, type 1, E-cadherin (epithelial) H97778 -20 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) AA463257 -19 **CD24 antigen (small cell lung carcinoma cluster 4 antigen) H59915 -18 matrix metalloproteinase 7 (matrilysin, uterine) AA031513 -17 solute carrier family 2, (facilitated glucose transporter) member 8 T59518 -16 H43515 -15 carcinoembryonic antigen-related cell adhesion molecule 7 AA058357 -14 cytochrome P450, subfamily I (dioxin-inducible), polypeptide 1 (glaucoma 3, primary infantile) AA040872 -13 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 (mitochondrial) AA496148 -12 cytochrome P450, subfamily I (dioxin-inducible), polypeptide 1 (glaucoma 3, primary infantile) AA448157 -11 egl nine homolog 3 (C. elegans) R00226 -10 monoamine oxidase B AA682423 -9 kynureninase (L-kynurenine hydrolase) H87471 -8 secretory leukocyte protease inhibitor (antileukoproteinase) AA026192 -7 Rho-related BTB domain containing 3 AA486017 -6 ceruloplasmin (ferroxidase) H86554 -5 aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase) R93124 -4 fatty acid binding protein 4, adipocyte N92901 -3 transcobalamin I (vitamin B12 binding protein, R binder family) AA155640 -2 S100 calcium binding protein P AA053016 -1 lactotransferrin AA677706